© The Rockefeller University Press,
0021-9525/1997//501 $5.00
The Journal of Cell Biology, Volume 136, Number 3,
, 1997 501-513
Assembly of CENP-A into Centromeric Chromatin Requires a Cooperative Array of Nucleosomal DNA Contact Sites
Richard D. Shelby,
Omid Vafa, and
Kevin F. Sullivan
Department of Cell Biology, The Scripps Research Institute, La Jolla, California 92037
We investigated the requirements for targeting the centromeric histone H3 homologue CENP-A for assembly at centromeres in human cells by transfection of epitope-tagged CENP-A derivatives into HeLa cells. Centromeric targeting is driven solely by the conserved histone fold domain of CENP-A. Using the crystal structure of histone H3 as a guide, a series of CENPA/histone H3 chimeras was constructed to test the role of discrete structural elements of the histone fold domain. Three elements were identified that are necessary for efficient targeting to centromeres. Two correspond to contact sites between histone H3 and nucleosomal DNA. The third maps to a homotypic H3–H3 interaction site important for assembly of the (H3/H4)2 heterotetramer. Immunoprecipitation confirms that CENP-A self-associates in vivo. In addition, targeting requires that CENP-A expression is uncoupled from histone H3 synthesis during S phase. CENP-A mRNA accumulates later in the cell cycle than histone H3, peaking in G2. Isolation of the gene for human CENP-A revealed a regulatory motif in the promoter region that directs the late S/G2 expression of other cell cycle–dependent transcripts such as cdc2, cdc25C, and cyclin A. Our data suggest a mechanism for molecular recognition of centromeric DNA at the nucleosomal level mediated by a cooperative series of differentiated CENP-A–DNA contact sites arrayed across the surface of a CENP-A nucleosome and a distinctive assembly pathway occurring late in the cell cycle.
1. Abbreviation used in this paper: HA, hemagglutinin.
Address all correspondence to Kevin F. Sullivan, Department of Cell Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 92037. Tel.: (619) 784-2350. Fax: (619) 784-2345. e-mail: ksulli van{at}scripps.edu

CiteULike
Complore
Connotea
Del.icio.us
Digg
Facebook
Reddit
Technorati
Twitter What's this?
This article has been cited by other articles:
-
Zeitlin, S. G., Baker, N. M., Chapados, B. R., Soutoglou, E., Wang, J. Y. J., Berns, M. W., Cleveland, D. W.
(2009). Double-strand DNA breaks recruit the centromeric histone CENP-A. Proc. Natl. Acad. Sci. USA
106: 15762-15767
[Abstract]
[Full Text]
-
Vermaak, D., Bayes, J. J., Malik, H. S.
(2009). A Surrogate Approach to Study the Evolution of Noncoding DNA Elements That Organize Eukaryotic Genomes. J Hered
100: 624-636
[Abstract]
[Full Text]
-
Perpelescu, M., Nozaki, N., Obuse, C., Yang, H., Yoda, K.
(2009). Active establishment of centromeric CENP-A chromatin by RSF complex. JCB
185: 397-407
[Abstract]
[Full Text]
-
Marshall, O. J., Marshall, A. T., Choo, K.H. A.
(2008). Three-dimensional localization of CENP-A suggests a complex higher order structure of centromeric chromatin. JCB
183: 1193-1202
[Abstract]
[Full Text]
-
Dalal, Y., Furuyama, T., Vermaak, D., Henikoff, S.
(2007). Inaugural Article: Structure, dynamics, and evolution of centromeric nucleosomes. Proc. Natl. Acad. Sci. USA
104: 15974-15981
[Abstract]
[Full Text]
-
Lindhout, B. I., Fransz, P., Tessadori, F., Meckel, T., Hooykaas, P. J.J., Zaal, B. J. v. d.
(2007). Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins. Nucleic Acids Res
0: gkm618v1-9
[Abstract]
[Full Text]
-
Stoler, S., Rogers, K., Weitze, S., Morey, L., Fitzgerald-Hayes, M., Baker, R. E.
(2007). Scm3, an essential Saccharomyces cerevisiae centromere protein required for G2/M progression and Cse4 localization. Proc. Natl. Acad. Sci. USA
104: 10571-10576
[Abstract]
[Full Text]
-
Jansen, L. E.T., Black, B. E., Foltz, D. R., Cleveland, D. W.
(2007). Propagation of centromeric chromatin requires exit from mitosis. JCB
176: 795-805
[Abstract]
[Full Text]
-
Zhang, J., Wang, S., Kern, S., Cui, X., Danner, R. L.
(2007). Nitric Oxide Down-regulates Polo-like Kinase 1 through a Proximal Promoter Cell Cycle Gene Homology Region. J. Biol. Chem.
282: 1003-1009
[Abstract]
[Full Text]
-
Moreno-Moreno, O., Torras-Llort, M., Azorin, F.
(2006). Proteolysis restricts localization of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres. Nucleic Acids Res
34: 6247-6255
[Abstract]
[Full Text]
-
Baker, R. E., Rogers, K.
(2006). Phylogenetic Analysis of Fungal Centromere H3 Proteins. Genetics
174: 1481-1492
[Abstract]
[Full Text]
-
Lermontova, I., Schubert, V., Fuchs, J., Klatte, S., Macas, J., Schubert, I.
(2006). Loading of Arabidopsis Centromeric Histone CENH3 Occurs Mainly during G2 and Requires the Presence of the Histone Fold Domain. Plant Cell
18: 2443-2451
[Abstract]
[Full Text]
-
Viens, A., Mechold, U., Brouillard, F., Gilbert, C., Leclerc, P., Ogryzko, V.
(2006). Analysis of Human Histone H2AZ Deposition In Vivo Argues against Its Direct Role in Epigenetic Templating Mechanisms.. Mol. Cell. Biol.
26: 5325-5335
[Abstract]
[Full Text]
-
Izuta, H., Ikeno, M., Suzuki, N., Tomonaga, T., Nozaki, N., Obuse, C., Kisu, Y., Goshima, N., Nomura, F., Nomura, N., Yoda, K.
(2006). Comprehensive analysis of the ICEN (Interphase Centromere Complex) components enriched in the CENP-A chromatin of human cells. GENES CELLS
11: 673-684
[Abstract]
[Full Text]
-
Lam, A. L., Boivin, C. D., Bonney, C. F., Rudd, M. K., Sullivan, B. A.
(2006). Human centromeric chromatin is a dynamic chromosomal domain that can spread over noncentromeric DNA.. Proc. Natl. Acad. Sci. USA
103: 4186-4191
[Abstract]
[Full Text]
-
Cervantes, M. D., Xi, X., Vermaak, D., Yao, M.-C., Malik, H. S.
(2006). The CNA1 Histone of the Ciliate Tetrahymena thermophila Is Essential for Chromosome Segregation in the Germline Micronucleus. Mol. Biol. Cell
17: 485-497
[Abstract]
[Full Text]
-
Tanaka, Y., Tachiwana, H., Yoda, K., Masumoto, H., Okazaki, T., Kurumizaka, H., Yokoyama, S.
(2005). Human Centromere Protein B Induces Translational Positioning of Nucleosomes on {alpha}-Satellite Sequences. J. Biol. Chem.
280: 41609-41618
[Abstract]
[Full Text]
-
Minoshima, Y., Hori, T., Okada, M., Kimura, H., Haraguchi, T., Hiraoka, Y., Bao, Y.-C., Kawashima, T., Kitamura, T., Fukagawa, T.
(2005). The Constitutive Centromere Component CENP-50 Is Required for Recovery from Spindle Damage. Mol. Cell. Biol.
25: 10315-10328
[Abstract]
[Full Text]
-
Savvidou, E., Cobbe, N., Steffensen, S., Cotterill, S., Heck, M. M. S.
(2005). Drosophila CAP-D2 is required for condensin complex stability and resolution of sister chromatids. J. Cell Sci.
118: 2529-2543
[Abstract]
[Full Text]
-
Mikami, Y., Hori, T., Kimura, H., Fukagawa, T.
(2005). The Functional Region of CENP-H Interacts with the Nuf2 Complex That Localizes to Centromere during Mitosis. Mol. Cell. Biol.
25: 1958-1970
[Abstract]
[Full Text]
-
Kamakaka, R. T., Biggins, S.
(2005). Histone variants: deviants?. Genes Dev.
19: 295-316
[Abstract]
[Full Text]
-
Morey, L., Barnes, K., Chen, Y., Fitzgerald-Hayes, M., Baker, R. E.
(2004). The Histone Fold Domain of Cse4 Is Sufficient for CEN Targeting and Propagation of Active Centromeres in Budding Yeast. Eukaryot Cell
3: 1533-1543
[Abstract]
[Full Text]
-
Wieland, G., Orthaus, S., Ohndorf, S., Diekmann, S., Hemmerich, P.
(2004). Functional Complementation of Human Centromere Protein A (CENP-A) by Cse4p from Saccharomyces cerevisiae. Mol. Cell. Biol.
24: 6620-6630
[Abstract]
[Full Text]
-
Obuse, C., Yang, H., Nozaki, N., Goto, S., Okazaki, T., Yoda, K.
(2004). Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex, while BMI-1 is transiently co-localized with the centromeric region in interphase. GENES CELLS
9: 105-120
[Abstract]
[Full Text]
-
CHAKRAVARTHY, S., BAO, Y., ROBERTS, V.A., TREMETHICK, D., LUGER, K.
(2004). Structural Characterization of Histone H2A Variants. Cold Spring Harb Symp Quant Biol
69: 227-234
[Abstract]
-
Ohzeki, J.-i., Nakano, M., Okada, T., Masumoto, H.
(2002). CENP-B box is required for de novo centromere chromatin assembly on human alphoid DNA. JCB
159: 765-775
[Abstract]
[Full Text]
-
Vermaak, D., Hayden, H. S., Henikoff, S.
(2002). Centromere Targeting Element within the Histone Fold Domain of Cid. Mol. Cell. Biol.
22: 7553-7561
[Abstract]
[Full Text]
-
Marc, F., Sandman, K., Lurz, R., Reeve, J. N.
(2002). Archaeal Histone Tetramerization Determines DNA Affinity and the Direction of DNA Supercoiling. J. Biol. Chem.
277: 30879-30886
[Abstract]
[Full Text]
-
Whitfield, M. L., Sherlock, G., Saldanha, A. J., Murray, J. I., Ball, C. A., Alexander, K. E., Matese, J. C., Perou, C. M., Hurt, M. M., Brown, P. O., Botstein, D.
(2002). Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors. Mol. Biol. Cell
13: 1977-2000
[Abstract]
[Full Text]
-
Talbert, P. B., Masuelli, R., Tyagi, A. P., Comai, L., Henikoff, S.
(2002). Centromeric Localization and Adaptive Evolution of an Arabidopsis Histone H3 Variant. Plant Cell
14: 1053-1066
[Abstract]
[Full Text]
-
Ando, S., Yang, H., Nozaki, N., Okazaki, T., Yoda, K.
(2002). CENP-A, -B, and -C Chromatin Complex That Contains the I-Type {alpha}-Satellite Array Constitutes the Prekinetochore in HeLa Cells. Mol. Cell. Biol.
22: 2229-2241
[Abstract]
[Full Text]
-
Malik, H. S., Vermaak, D., Henikoff, S.
(2002). Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone. Proc. Natl. Acad. Sci. USA
10.1073/pnas.032664299v1
[Abstract]
[Full Text]
-
Gilbert, N., Allan, J.
(2001). Distinctive higher-order chromatin structure at mammalian centromeres. Proc. Natl. Acad. Sci. USA
98: 11949-11954
[Abstract]
[Full Text]
-
Sullivan, B., Karpen, G.
(2001). Centromere identity in Drosophila is not determined in vivo by replication timing. JCB
154: 683-690
[Abstract]
[Full Text]
-
Henikoff, S., Ahmad, K., Malik, H. S.
(2001). The Centromere Paradox: Stable Inheritance with Rapidly Evolving DNA. Science
293: 1098-1102
[Abstract]
[Full Text]
-
Maggert, K. A., Karpen, G. H.
(2001). The Activation of a Neocentromere in Drosophila Requires Proximity to an Endogenous Centromere. Genetics
158: 1615-1628
[Abstract]
[Full Text]
-
Moore, L. L., Roth, M. B.
(2001). Hcp-4, a Cenp-C-Like Protein inCaenorhabditis elegans, Is Required for Resolution of Sister Centromeres. JCB
153: 1199-1208
[Abstract]
[Full Text]
-
Ahmad, K., Henikoff, S.
(2001). Centromeres Are Specialized Replication Domains in Heterochromatin. JCB
153: 101-110
[Abstract]
[Full Text]
-
Malik, H. S., Henikoff, S.
(2001). Adaptive Evolution of Cid, a Centromere-Specific Histone in Drosophila. Genetics
157: 1293-1298
[Abstract]
[Full Text]
-
Shelby, R. D., Monier, K., Sullivan, K. F.
(2000). Chromatin Assembly at Kinetochores Is Uncoupled from DNA Replication. JCB
151: 1113-1118
[Abstract]
[Full Text]
-
Keith, K. C., Fitzgerald-Hayes, M.
(2000). CSE4 Genetically Interacts With the Saccharomyces cerevisiae Centromere DNA Elements CDE I and CDE II but Not CDE III: Implications for the Path of the Centromere DNA Around a Cse4p Variant Nucleosome. Genetics
156: 973-981
[Abstract]
[Full Text]
-
Leach, T. J., Chotkowski, H. L., Wotring, M. G., Dilwith, R. L., Glaser, R. L.
(2000). Replication of Heterochromatin and Structure of Polytene Chromosomes. Mol. Cell. Biol.
20: 6308-6316
[Abstract]
[Full Text]
-
Glowczewski, L., Yang, P., Kalashnikova, T., Santisteban, M. S., Smith, M. M.
(2000). Histone-Histone Interactions and Centromere Function. Mol. Cell. Biol.
20: 5700-5711
[Abstract]
[Full Text]
-
Takahashi, K., Chen, E. S., Yanagida, M.
(2000). Requirement of Mis6 Centromere Connector for Localizing a CENP-A-Like Protein in Fission Yeast. Science
288: 2215-2219
[Abstract]
[Full Text]
-
Barry, A. E., Bateman, M., Howman, E. V., Cancilla, M. R., Tainton, K. M., Irvine, D. V., Saffery, R., Choo, K.H. A.
(2000). The 10q25 Neocentromere and its Inactive Progenitor Have Identical Primary Nucleotide Sequence: Further Evidence for Epigenetic Modification. Genome Res
10: 832-838
[Abstract]
[Full Text]
-
Badie, C., Itzhaki, J. E., Sullivan, M. J., Carpenter, A. J., Porter, A. C. G.
(2000). Repression of CDK1 and Other Genes with CDE and CHR Promoter Elements during DNA Damage-Induced G2/M Arrest in Human Cells. Mol. Cell. Biol.
20: 2358-2366
[Abstract]
[Full Text]
-
Ly, D. H., Lockhart, D. J., Lerner, R. A., Schultz, P. G.
(2000). Mitotic Misregulation and Human Aging. Science
287: 2486-2492
[Abstract]
[Full Text]
-
Howman, E. V., Fowler, K. J., Newson, A. J., Redward, S., MacDonald, A. C., Kalitsis, P., Choo, K. H. A.
(2000). Early disruption of centromeric chromatin organization in centromere protein A (Cenpa) null mice. Proc. Natl. Acad. Sci. USA
97: 1148-1153
[Abstract]
[Full Text]
-
Saffery, R., Irvine, D. V., Griffiths, B., Kalitsis, P., Wordeman, L., Choo, K.H. A.
(2000). Human centromeres and neocentromeres show identical distribution patterns of >20 functionally important kinetochore-associated proteins.. Hum Mol Genet
9: 175-185
[Abstract]
[Full Text]
-
Henikoff, S., Ahmad, K., Platero, J. S., van Steensel, B.
(2000). From the Cover: Heterochromatic deposition of centromeric histone H3-like proteins. Proc. Natl. Acad. Sci. USA
97: 716-721
[Abstract]
[Full Text]
-
Aagaard, L, Schmid, M, Warburton, P, Jenuwein, T
(2000). Mitotic phosphorylation of SUV39H1, a novel component of active centromeres, coincides with transient accumulation at mammalian centromeres. J. Cell Sci.
113: 817-829
[Abstract]
-
Keith, K. C., Baker, R. E., Chen, Y., Harris, K., Stoler, S., Fitzgerald-Hayes, M.
(1999). Analysis of Primary Structural Determinants That Distinguish the Centromere-Specific Function of Histone Variant Cse4p from Histone H3. Mol. Cell. Biol.
19: 6130-6139
[Abstract]
[Full Text]
-
Ma, H., Siegel, A. J., Berezney, R.
(1999). Association of Chromosome Territories with the Nuclear Matrix: Disruption of Human Chromosome Territories Correlates with the Release of a Subset of Nuclear Matrix Proteins. JCB
146: 531-542
[Abstract]
[Full Text]
-
Zhu, X.
(1999). Structural Requirements and Dynamics of Mitosin-Kinetochore Interaction in M Phase. Mol. Cell. Biol.
19: 1016-1024
[Abstract]
[Full Text]
-
Gardner, M. J., Tettelin, H., Carucci, D. J., Cummings, L. M., Aravind, L., Koonin, E. V., Shallom, S., Mason, T., Yu, K., Fujii, C., Pederson, J., Shen, K., Jing, J., Aston, C., Lai, Z., Schwartz, D. C., Pertea, M., Salzberg, S., Zhou, L., Sutton, G. G., Clayton, R., White, O., Smith, H. O., Fraser, C. M., Adams, M. D., Venter, J. C., Hoffman, S. L.
(1998). Chromosome 2 Sequence of the Human Malaria Parasite Plasmodium falciparum. Science
282: 1126-1132
[Abstract]
[Full Text]
-
Lomonte, P., Sullivan, K. F., Everett, R. D.
(2001). Degradation of Nucleosome-associated Centromeric Histone H3-like Protein CENP-A Induced by Herpes Simplex Virus Type 1 Protein ICP0. J. Biol. Chem.
276: 5829-5835
[Abstract]
[Full Text]
-
Korner, K., Jerome, V., Schmidt, T., Muller, R.
(2001). Cell Cycle Regulation of the Murine cdc25B Promoter. ESSENTIAL ROLE FOR NUCLEAR FACTOR-Y AND A PROXIMAL REPRESSOR ELEMENT. J. Biol. Chem.
276: 9662-9669
[Abstract]
[Full Text]
-
Leach, T. J., Mazzeo, M., Chotkowski, H. L., Madigan, J. P., Wotring, M. G., Glaser, R. L.
(2000). Histone H2A.Z Is Widely but Nonrandomly Distributed in Chromosomes of Drosophila melanogaster. J. Biol. Chem.
275: 23267-23272
[Abstract]
[Full Text]
-
Malik, H. S., Vermaak, D., Henikoff, S.
(2002). Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone. Proc. Natl. Acad. Sci. USA
99: 1449-1454
[Abstract]
[Full Text]
-
Zeitlin, S. G., Shelby, R. D., Sullivan, K. F.
(2001). CENP-A is phosphorylated by Aurora B kinase and plays an unexpected role in completion of cytokinesis. JCB
155: 1147-1158
[Abstract]
[Full Text]