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© The Rockefeller University Press,
0021-9525/2000//239 $5.00
The Journal of Cell Biology, Volume 148, Number 2,
, 2000 239-246
Brief Report |
Nuclear Eukaryotic Initiation Factor 4e (Eif4e) Colocalizes with Splicing Factors in Speckles
nsonen{at}med.mcgill.ca
The eukaryotic initiation factor 4E (eIF4E) plays a pivotal role in the control of protein synthesis. eIF4E binds to the mRNA 5' cap structure, m7GpppN (where N is any nucleotide) and promotes ribosome binding to the mRNA. It was previously shown that a fraction of eIF4E localizes to the nucleus (Lejbkowicz, F., C. Goyer, A. Darveau, S. Neron, R. Lemieux, and N. Sonenberg. 1992. Proc. Natl. Acad. Sci. USA. 89:9612–9616). Here, we show that the nuclear eIF4E is present throughout the nucleoplasm, but is concentrated in speckled regions. Double label immunofluorescence confocal microscopy shows that eIF4E colocalizes with Sm and U1snRNP. We also demonstrate that eIF4E is specifically released from the speckles by the cap analogue m7GpppG in a cell permeabilization assay. However, eIF4E is not released from the speckles by RNase A treatment, suggesting that retention of eIF4E in the speckles is not RNA-mediated. 5,6-dichloro-1-β-D-ribofuranosylbenzimidazole (DRB) treatment of cells causes the condensation of eIF4E nuclear speckles. In addition, overexpression of the dual specificity kinase, Clk/Sty, but not of the catalytically inactive form, results in the dispersion of eIF4E nuclear speckles.
Key Words: nuclear proteins peptide initiation factor RNA caps RNA splicing cap-binding protein
© 2000 The Rockefeller University Press
| Introduction |
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Nuclear cap-binding proteins that are likely to mediate the various nuclear functions of the cap have been detected and some identified ( Patzelt et al. 1983; Rozen and Sonenberg 1987; Izaurralde et al. 1992). For example, the nuclear cap-binding complex (CBC), composed of CBP20 and CBP80, is involved in mRNA splicing ( Izaurralde et al. 1994; Lewis et al. 1996). CBC also stimulates nucleocytoplasmic export of UsnRNAs ( Izaurralde et al. 1995). A study on the Balbiani ring mRNA export of Chironomus tentans demonstrates that CBC binds cotranscriptionally to the cap and accompanies the ribonucleoprotein particle during nuclear export ( Visa et al. 1996). Additionally, CBC stimulates mRNA 3' end processing ( Flaherty et al. 1997).
Cellular fractionation and immunofluorescence analysis demonstrated that a sizeable fraction (12–33%) of total eIF4E is localized to the nucleus of mammalian cells ( Lejbkowicz et al. 1992). Electron microscope studies showed that eIF4E is also present in the nucleus of Saccharomyces cerevisiae ( Lang et al. 1994). These results raise the possibility that eIF4E may also play a nuclear role in mRNA metabolism, such as splicing or transport. Many, but not all, splicing factors are concentrated in subnuclear structures termed "speckles". The speckles (20–50 speckles per nucleus) are irregular shaped bodies. Although the precise function of the speckles remains controversial, there is evidence that the speckles are sites of posttranscriptional splicing ( Xing et al. 1993, Xing et al. 1995) and of splicing component storage and/or assembly ( Puvion and Puvion-Dutilleul 1996; Spector 1996). Here, we show that the nuclear fraction of eIF4E colocalizes with splicing factors in the speckles. We demonstrate that the nuclear distribution of eIF4E is sensitive to RNA polymerase II transcription inhibitors and the availability of cap structures, but not to RNase treatment. Similar to serine/arginine-rich (SR) splicing factors, the localization of eIF4E is regulated by the dual specificity kinase, Clk/Sty.
| Materials and Methods |
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Immunofluorescence Assay
CV-1 monkey kidney cells and HeLa cells were plated at 2 x 104 per chamber on Lab-Tek chamber slides (Nunc) and grown to subconfluence in DME supplemented with 10% FBS. Cells were fixed for 1 h with 4% formaldehyde in PBS and permeabilized for 1 h with 4% formaldehyde/0.2% Tween 20 in PBS at room temperature (RT). Cells were briefly rehydrated with 0.2% Tween 20 in PBS before blocking overnight in a solution containing 50% FBS, 6% skim milk, 3% BSA, 0.2% Tween 20, and 0.02% sodium azide. Cells were incubated with primary antibodies for 2 h at RT or overnight at 4°C, and washed extensively with 0.2% Tween 20/PBS before and after incubation with secondary antibodies for 30 min to 1 h at RT. Cells were mounted in 30% glycerol in PBS and analyzed by confocal microscopy. For incubation of HeLa cells with drugs, cycloheximide was added at a final concentration of 20 µM and 5,6-dichloro-1-β-D-ribofuranosylbenzimidazole (DRB) was used at 100 µM.
Cell Permeabilization Assay
The assay was done as described previously, except for a few modifications ( Adam et al. 1990). In brief, HeLa cells were plated at low density on coverslips, grown in DME/10%FBS for at least 24 h, and the media was changed 2–4 h before the experiment. Coverslips were briefly rinsed in transport buffer (20 mM Hepes/KOH, pH 7.3, 110 mM potassium acetate, 2 mM sodium acetate, 5 mM magnesium acetate, 1 mM EGTA, 2 mM ditriothreitol, 1 µg/ml aprotinin, 1 µg/ml leupeptin, 1 µg/ml pepstatin) and incubated for 4 min at RT in transport buffer containing 40 µg/ml digitonin. Coverslips were gently rinsed and inverted on a parafilm sheet over a drop of transport buffer containing 2 µg/µl BSA and 50 mM m7GpppG or GpppG. The reaction was done at 30°C for 25 min. Cells were rinsed, fixed in transport buffer containing 3% formaldehyde, and processed for immunofluorescence as described above. This experiment was performed three times with the same results.
RNase Digestion
RNase treatment was performed as previously described ( Spector et al. 1991). In brief, cells (CV-1) were fixed in methanol for 2 min at –20°C, rinsed in PBS, and incubated with RNase A (100 µg/ml) for 2 h at RT. Cells were washed several times and processed for immunofluorescence as described.
Transient Transfections
HeLa cells were plated at low density on 60-mm dishes in DME/10% FBS. At 50% confluency, cells were transfected with 10 µg of plasmid DNA by the calcium phosphate transfection method ( Graham and Eb 1973). Cells were fixed and processed for immunofluorescence 24 h after transfection.
| Results |
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The Nuclear Distribution of eIF4E Is Sensitive to RNA Polymerase II Transcription
Inhibition of RNA polymerase II transcription by the nucleoside DRB was shown to cause the rounding up of splicing factor speckles ( Spector et al. 1993). To determine whether the localization of nuclear eIF4E is also sensitive to RNA pol II transcription inhibition, HeLa cells were treated with DRB alone or in the presence of cycloheximide to inhibit protein synthesis. Addition of DRB in the presence or absence of cycloheximide resulted in the rounding up of eIF4E ( Fig. 3c and Fig. d), SC35 ( Fig. 3g and Fig. h), and Sm ( Fig. 3k and Fig. l) speckles. Similar results were also obtained when cells were treated with
-amanitin (data not shown). Incubation with cycloheximide alone had no effect on the distribution of either protein ( Fig. 3b, Fig. f, and Fig. g). These results show that similar to splicing components, the nuclear distribution of eIF4E is sensitive to RNA pol II transcription and is independent of translation.
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The Nuclear Distribution of eIF4E Is Regulated by the Dual Specificity Kinase Clk/Sty
Splicing factors of the SR family are substrates for the dual specificity kinase, Clk/Sty ( Colwill et al. 1996). Expression of mammalian Clk/Sty wt in COS-1 cells causes the release of SR proteins from the speckles, whereas a catalytically inactive Clk/Sty does not ( Colwill et al. 1996; Caceres et al. 1998). To examine whether Clk/Sty also affects the localization of eIF4E, HeLa cells were transiently transfected with myc-Clk/Sty wt or the catalytically inactive myc-Clk/StyK190R, and the localization of eIF4E was determined by immunofluorescence. Expression of Clk/Sty wt, but not Clk/StyK190R, resulted in the disruption of the eIF4E speckles ( Fig. 5A and Fig. B, top). As previously reported, in transfected cells using anti-SC35 or the anti-SR mAb 104, which is specific for phosphorylated SR proteins and recognizes all SR family members ( Colwill et al. 1996; Caceres et al. 1998), Clk/Sty wt, but not the catalytically inactive kinase, released the SR splicing factors from the speckles ( Fig. 5A and Fig. B, middle and bottom; Colwill et al. 1996). Taken together, these results indicate that the nuclear localization of eIF4E is regulated by the dual specificity kinase, Clk/Sty.
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| Discussion |
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In a cell permeabilization assay, eIF4E was specifically released from the nucleus by m7GpppG ( Fig. 4 A). One interpretation of this result could be that eIF4E is associated with pre-mRNA in the speckles, and that this association is disrupted by m7GpppG. This model is consistent with previous electron microscope studies demonstrating that the speckles contain poly A RNA ( Carter et al. 1991). Alternatively, it is possible that the speckled eIF4E is not associated with mRNA and that eIF4E in the speckles is released to the nucleoplasm as a result of its interaction with the excess cap analogue. This is consistent with the resistance of eIF4E in the speckles to RNase treatment. However, as indicated earlier, the resistance of eIF4E to RNase treatment is not definitive proof for the lack of association of eIF4E with mRNA. Taken together, our results suggests that eIF4E is retained in the speckles primarily through its association with proteins and not RNA.
The localization of eIF4E to the speckles raises the possibility of a role in mRNA processing. This is consistent with the observation that DRB causes the clustering of eIF4E speckles. DRB and
-amanitin inhibit RNA polymerase II transcription at the elongation step ( Cochet-Meilhac and Chambon 1974; Koumenis and Giaccia 1997; Zhu et al. 1997) and cause the rounding up of splicing factor speckles ( Spector et al. 1993; Spector 1996). It was suggested that the clustering of splicing factors results from the accumulation of splicing components at the storage sites in response to the reduction of pre-mRNA levels ( Spector 1996), and as a consequence, in less splicing. Accordingly, disruption of pre-mRNA splicing in vivo by microinjected oligonucleotides or antibodies against snRNAs also causes the clustering of splicing factors ( O'Keefe et al. 1994). This explanation could also apply to eIF4E as a potential component of the splicing machinery.
Since U1 and U2 snRNAs colocalize with snRNPs and SC35 ( Huang and Spector 1992), eIF4E could, in principle, also be associated with the trimethylated cap (m3G) of UsnRNAs in the speckles. However, this does not appear likely because UsnRNPs can be quantitatively immunoprecipitated from intact particles with an m3G-specific antibody ( Bringmann et al. 1983), indicating that this structure is not sequestered by proteins ( Kramer et al. 1984). Also, the affinity of eIF4E for the trimethylated cap structure is tenfold less than that for the monomethylated cap ( Wieczorek et al. 1999). Additionally, the m3G cap is a poor inhibitor of cap-dependent translation and substitution of the monomethylated cap with the trimethylated cap on β-globin mRNA reduced its translation by fourfold ( Darzynkiewicz et al. 1988).
Expression of the Clk/Sty kinase in COS-1 cells causes the release of the ASF/SF2 SR protein from the speckles ( Colwill et al. 1996). The dual specificity Clk/Sty kinase phosphorylates the serine/arginine-rich region (RS domain) of SR splicing factors. Phosphorylation of this domain is required for the activation of SR splicing factors ( Mermoud et al. 1994) and has been implicated in protein–protein interactions ( Kohtz et al. 1994). Since Clk/Sty interacts with ASF/SF2 through its RS domain, it may also associate and phosphorylate other constituents of the speckles and participate in a more general mechanism of splicing activation. Expression of Clk/Sty wt, but not of Clk/StyK190R, dispersed the nuclear eIF4E speckles. These results suggest that the nuclear localization of eIF4E is dependent on the distribution of SR splicing factors or, more generally, on splicing activity. Since eIF4E does not contain an RS motif, the identification of nuclear eIF4E-binding proteins should be helpful in establishing the mechanism by which Clk/Sty releases eIF4E from the speckles.
Since our results raise the possibility that eIF4E is associated with splicing factors, eIF4E could be involved in splicing and/or mRNA export. There is persuasive evidence that the nuclear CBC is important for mRNA splicing ( Izaurralde et al. 1994; Lewis et al. 1996) and UsnRNA export ( Izaurralde et al. 1995). eIF4E perhaps could be required for the processing of a specific subset of mRNAs. eIF4E may be colocalized with splicing components and regulated in a similar fashion to prevent its association with the monomethylated cap structure of snRNAs. A subset of snRNAs, including U1, U2, U4, and U5, are transcribed by RNA polymerase II and acquire a monomethylated cap structure before their export to the cytoplasm for hypermethylation ( Huber et al. 1998). As these snRNAs are not spliced, targeting of eIF4E to pre-mRNAs through its interaction with specific splicing factors could provide an effective way to prevent the tethering of snRNAs to the translation machinery.
Previous studies showed that overexpression of eIF4E in NIH3T3 cells increases cyclin D1 expression by stimulating its mRNA export ( Rousseau et al. 1996). However, it is not known whether eIF4E stimulates cyclin D1 mRNA export directly through its association with the cap in the nucleus, or indirectly by increasing the levels of a protein involved in the export of this mRNA. Nevertheless, it seems reasonable that once associated with the cap, eIF4E will accompany the RNA to the cytoplasm. Since eIF4E is retained in rounded up speckles after transcription inhibition and is colocalized with splicing factors, it remains to be determined whether eIF4E binds to the cap early during RNA polymerase II transcription, and whether it could be involved in 3' mRNA processing, splicing, and nucleocytoplasmic transport of mRNA.
| Acknowledgments |
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J. Dostie was supported by a studentship from the Medical Research Council of Canada. F. Lejbkowicz was supported by a fellowship from Israel Cancer Research Fund (Montréal). This work was supported by a grant from the Medical Research Council of Canada to N. Sonenberg. N. Sonenberg is a Distinguished Scientist of the Medical Research Council of Canada and a Howard Hughes Medical Institute International Scholar.
Submitted: 27 September 1999
Revised: 11 November 1999
Accepted: 1 December 1999
Josée Dostie and Flavio Lejbkowicz contributed equally to this work.
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