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© The Rockefeller University Press,
0021-9525/2001//545 $5.00
The Journal of Cell Biology, Volume 152, Number 3,
, 2001 545-552
Original Article |
Pitx2 Regulates Procollagen Lysyl Hydroxylase (Plod) Gene Expression
: Implications for the Pathology of Rieger Syndrome
b Department of Biological Science, University of Tulsa, Tulsa, Oklahoma 74104
University of Iowa, Department of Pediatrics, 140 EMRB, Iowa City, IA 52242.(319) 335-6970(319) 335-6897
jeff-murray{at}uiowa.edu
The Rieger syndrome is an autosomal dominant disease characterized by ocular, craniofacial, and umbilical defects. Patients have mutations in PITX2, a paired-bicoid homeobox gene, also involved in left/right polarity determination. In this study we have identified a family of genes for enzymes responsible for hydroxylizing lysines in collagens as one group of likely cognate targets of PITX2 transcriptional regulation. The mouse procollagen lysyl hydroxylase (Plod)-2 gene was enriched for by chromatin precipitation using a PITX2/Pitx2-specific antibody. Plod-2, as well as the human PLOD-1 promoters, contains multiple bicoid (PITX2) binding elements. We show these elements to bind PITX2 specifically in vitro. The PLOD-1 promoter induces the expression of a luciferase reporter gene in the presence of PITX2 in cotransfection experiments. The Rieger syndrome causing PITX2 mutant T68P fails to induce PLOD-1–luciferase. Mutations and rearrangements in PLOD-1 are known to be prevalent in patients with Ehlers-Danlos syndrome, kyphoscoliosis type (type VI [EDVI]). Several of the same organ systems are involved in Rieger syndrome and EDVI.
Key Words: PITX2 PLOD Rieger Ehlers-Danlos promoter
© 2001 The Rockefeller University Press
| Introduction |
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The PITX genes are members of the bicoid class of the homeodomain proteins. These have a lysine residue at position nine of the third helix and are especially noteworthy for a role in both DNA and RNA binding (Dubnau and Struhl 1996; Amendt et al. 1998). In Drosophila, seven different target genes have been identified epistatically and biochemically for bicoid (Driever and Nüsslein-Volhard 1989; Jackle and Sauer 1993). Target genes for Pitx2 have only been described for the pituitary; the prolactin gene is synergistically upregulated by Pit-1 and Pitx2 (Simmons et al. 1990; Szeto et al. 1996; Ryan and Rosenfeld 1997; Amendt et al. 1998. Other pituitary-specific Pitx2 target genes have also been described (Tremblay et al. 2000). Recently, we presented the first study on Pitx2 protein expression in the eye, as well as directly demonstrating asymmetric protein expression in the early development of mouse gut, heart, and lung (Hjalt and Murray 2000).
PITX2 was first identified by positional cloning of the 4q25 locus, but only 40% of patients diagnosed with classical Rieger syndrome have PITX2 mutations (Semina et al. 1996). Other loci for Rieger syndrome include RIEG2 on 13q14 and FKHL7/FOXE7 on 6p25 (for reviews see Craig and Mackey 1999; Amendt et al. 2000). Still undescribed genes/loci for Rieger syndrome may be downstream of PITX2. It is also still unknown which genes are the cognate targets for PITX2 in left/right asymmetry regulation in the development of the heart, gut, and lung.
Chromatin precipitation is a direct method for in vivo detection of target genes. It has been used successfully to identify: ultrabithorax target genes (Gould et al. 1990), polycomb-repressed domains in the bithorax complex (Orlando and Paro 1993), Pax-2 in vivo binding sites (Phelps and Dressler 1996), and a Hox-C8 target gene (Tomotsune et al. 1993).
Here we identify some members of the procollagen lysyl hydroxylase (PLOD) family, genes for enzymes that hydroxylate lysines in collagens, as cognate targets for Pitx2/PITX2, by chromatin precipitation. The hydroxylysine residues have two important functions: as attachment sites for carbohydrate units and to provide stability to intermolecular cross-links. Cross-links involving hydroxylysine-derived aldehydes are more stable than those involving lysine-derived aldehydes (Prockop and Kivirikko 1984; Kivirikko and Myllylä 1985; Kivirikko et al. 1992).
Point mutations and rearrangements in the human PLOD1 are causative for the Ehlers-Danlos syndrome, kyphoscoliosis type, type VI (EDVI), characterized by ocular, muscular, and skin defects (Hyland et al. 1992; Heikkinen et al. 1997; Valtavaara et al. 1997). The proximal promoter regions of both PLOD-1 and Plod-2 harbor multiple bicoid elements. We show these elements to bind the PITX2 protein in vitro, as well as activate a reporter gene in transient transfection assays. A Rieger syndrome causing PITX2 mutant, T68P, cannot induce the PLOD-1 promoter.
| Materials and Methods |
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ZAPExpress vector (Stratagene), and packaged into phage particles (GigaPack III Gold; Stratagene), producing a primary library of 1.7 x 105 independent clones. Clones were chosen at random, excised using the ExAssist helper phage, prepared as plasmids, and the inserts were cleaved out and labeled with [32P]dCTP. The labeled inserts were used as probes for genomic Southern analyses and to probe a portion of the unamplified library in a plaque hybridization assay. Sometimes vector backbone DNA was difficult to separate from insert on a gel (same size). In these cases, vector T3 and T7 primers were used to PCR amplify the insert for probe production.
Bacterial Artificial Chromosome Screening and Sequencing
We screened bacterial artificial chromosome (BAC) libraries by PCR and BAC clones in pBeloBac11 were obtained from Research Genetics (mouse Plod-2, 249B6; human PLOD-1, 33A19). BAC DNA was prepared and sequenced directly as described previously (Hjalt and Murray 1999).
Electrophoretic Mobility Shift Assay
Oligodeoxyribonucleotides (see Table and Fig. 2) were synthesized (Integrated DNA Technologies) in complementary pairs, annealed to form double stranded DNA, and labeled by kinasing with [
-32P]ATP. The probes were purified on Sephacryl S-200 Microspin columns (Amersham Pharmacia Biotech) and the activity was measured by scintillation counting. Bacterially overexpressed PITX2 was prepared as described previously (Hjalt and Murray 2000). Electrophoretic mobility shift assays (EMSAs) were performed essentially as described in Amendt et al. 1998. The Plod-2 G probe was modified from the sequence in the promoter. The wild-type Plod-2 G probe would form concatemers during annealing (not shown). The GC-rich 3' sequence (GCGCCGCGGG) was substituted for an arbitrary AT-rich sequence (AAAATCATGA).
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Real-Time PCR
An ABI Prism Sequence Detector 7700, with the program Sequence Detector v1.7, was used for real-time PCR experiments, performed according to the recommendations of the manufacturer. Primers (Table ) were designed using PrimerExpress 1.5. Primers for 45S/18S rDNA amplify the segment between nucleotides 251 and 315 (5' of transcription initiation) in GenBank/EMBL/DDBJ accession no. V00850. Primers for prolactin amplifies the segment between nucleotides 112–180 (exon 2) in GenBank/EMBL/DDBJ accession no. X02892. The 18S and prolactin products were detected using CyberGreen Master Mix (PerkinElmer). Primers for the Plod-2 promoter amplifies the segment between –535 and –466 in Fig. 2 B. The Plod-2 product was detected using a TaqMan probe (Table ) and TaqMan Master Mix (Applied Biosystems/Roche). 80 ng was used per reaction for both the control and the immunoenriched mouse DNA in four independent experiments. All PCR profiles were 50°C for 2 min, 95°C for 10 min, and 40 cycles at 94°C for 15 s, 60°C for 1 min. The differences in threshold cycle value,
Ct, were obtained by comparing the Ct values for normal total mouse genomic DNA and immunoenriched mouse DNA. The results were normalized to the corresponding
Ct values for the control primer set, 18S ribosomal DNA, such that fold enrichment was calculated as: 2[
Ct(18S) +
Ct(assayed gene)].
Reporter and Expression Constructs
Parts of the PLOD-1 promoter sequence were cloned into the luciferase gene expression vector pGL3 (Promega). Construct A, a 3,140-bp Apa1 fragment containing 10 bicoid elements and ending 37 bp upstream of exon 1 (positions 265–3404, in GenBank/EMBL/DDBJ accession no. AF081786; see Fig. 2 A), was excised from the human BAC 33A19 (Research Genetics) and cloned into the Apa1 site of pBluescriptIISK–. The reporter constructs were PCR amplified from this clone. The Plod-1 2561 luciferase reporter contains Plod-1 sequences from –60 to –880 and has the TAATAA and CAAT boxes (see Fig. 2). The 5' sense primer contains a unique BamH1 site (underlined) linked to the Plod-1 sequence, 5'- CGGGATCCCAAGAGTGAAACTCTGTCTC-3', and the 3' antisense primer contains a unique HindIII site (underlined) 5'-CCCCAAGCTTCCCCGCCCCTCCACGCCC-3'. To make the Plod-1 261 luciferase reporter, the sequence from –60 to –3180 was PCR-amplified. The 5' sense primer contains BamH1 site (underlined) linked to the Plod-1 sequence, 5'-CGGGATCCAAGCAGTCCTCCTGCCTT-3', and the above 3' antisense primer. The PCR products were digested with BamH1 and HindIII isolated and ligated into thymidine kinase (TK)-luc (Amendt et al. 1999), which was digested with BamH1 and HindIII to remove the TK promoter. The Plod-1 sequences were cloned upstream of the luciferase gene. The PCR profile consisted of 94°C for 1.5 min, 60°C for 2 min, and 72°C for 3 min for 30 cycles with Pfu DNA polymerase (Stratagene). A cytomegalovirus (CMV)–β-galactosidase reporter plasmid (CLONTECH Laboratories, Inc.) was cotransfected in all experiments as a control for transfection efficiency. Expression plasmids containing the CMV promoter linked to the PITX2 DNA were constructed in pcDNA 3.1 MycHisC (Invitrogen) as described previously (Amendt et al. 1998).
Cell Culture, Transient Transfections, Luciferase, and β-Galactosidase Assays
CHO cells were cultured in DME supplemented with 5% FBS and penicillin/streptomycin in 60-mm dishes and transfected by electroporation. CHO cells were mixed with 2.5 µg of expression plasmids, 5 µg of reporter plasmid, and 0.5 µg of CMV–β-galactosidase plasmid plated in 60-mm culture dishes and then fed with 5% FBS and DME. Electroporation of CHO cells was at 360 V and 950 µF; cells were fed 24 h before transfection. HeLa cells were mixed with 2.5 µg of expression plasmids, 5 µg of reporter plasmid, and 0.5 µg of CMV–β-galactosidase plasmid. HeLa cells were electroporated at 220 V and 960 µF (Bio-Rad Laboratories), plated in 60-mm culture dishes, and fed with 5% FBS and DME as described previously (Amendt et al. 1998). Cells were then lysed and assayed for reporter activities and protein content by Bradford assay (Bio-Rad Laboratories). Luciferase was measured using reagents from Promega. β-Galactosidase was measured using the Galacto-Light Plus reagents (Tropix, Inc.). All luciferase activities were normalized to β-galactosidase activity. Expression of transiently expressed PITX2 proteins has been demonstrated previously (Amendt et al. 1998).
| Results |
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Ct values are presented in Table . The Plod-2 promoter was enriched 32-fold and the prolactin exon 2 was enriched 12-fold in this assay.
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PITX2 Regulates PLOD-1–luciferase Fusions in Cell Culture
We proceeded to clone the PLOD-1 promoter in a luciferase reporter gene vector. We characterized the response to PITX2 by cotransfecting the PLOD-1–luciferase construct with a PITX2 expression vector. In CHO cells, the PLOD-1 261 construct containing 10 bicoid elements was activated 20-fold by PITX2A (Fig. 4 A). The minimal promoter constructs, PLOD-1 2561, were modestly activated (approximately fivefold) by PITX2. We attribute the modest activation to the fact that two bicoid-like sites remain, one TAACCC and one TAAGCC, in the minimal construct. Such elements are known to bind PITX2 in vitro (Amendt, B., unpublished data). In HeLa cells, PLOD-1 was activated 6.5-fold by PITX2A (Fig. 4 B). Furthermore, we found that a PITX2 gene carrying the Rieger syndrome causing mutation T68P failed to upregulate PLOD-1 in cell culture (Fig. 5). This protein can be expressed in cell culture (Amendt et al. 1998). The responses were similar to the negative controls both in CHO cells (Fig. 5 B) and in HeLa cells (Fig. 5 C).
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Clinical Similarities between Rieger and EDVI
We compared the reported clinical manifestations of Rieger syndrome and EDVI. We used the database Online Mendelian Inheritance in Man (available at http://www.ncbi.nlm.nih.gov/omim/) textbooks (e.g., Traboulsi 1998), as well as published and unpublished clinical observations (May and Beauchamp 1987; Wenstrup et al. 1989; Heikkinen et al. 1997; Murray, J.C., unpublished). Several similarities of organ system involvement are listed in Table . Most notable are the comparable ocular and abdominal abnormalities.
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| Discussion |
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170-fold in a chromatin precipitation assay using a Pitx2/PITX2-specific antibody. This antibody does not cross-react with PITX1 or PITX3 (Hjalt and Murray 2000). However, we do not exclude the possibility that Pitx1/Pitx3/PITX1/PITX3 might also be involved in the regulation of the Plod/PLOD genes. Indeed, it has been shown that PITX1 and PITX2 share DNA binding and transactivating properties of target genes in the pituitary (Tremblay et al. 2000). (b) The PLOD-1 and Plod-2 genes contain clusters of bicoid elements in their proximal promoter regions and we have shown that these elements bind PITX2 in vitro. (c) We have shown that the proximal PLOD-1 promoter can be induced to express a reporter gene in the presence of PITX2. (d) The Rieger syndrome causing PITX2 mutant T68P fails to induce the PLOD-1 reporter gene construct. (e) The EDVI patients share several characteristics with the Rieger syndrome patients (Table ). It is normally easy to distinguish these two disorders from each other. However, the similarities of organ systems involved pointed out here are indicative of the role that lysine hydroxylation of collagens may play in Rieger syndrome. (f) The EDVI patients also have defects in tissues corresponding to where Pitx2 is expressed in the mouse, such as cornea, skeletal muscle, aorta smooth muscle, and skin (May and Beauchamp 1987; Wenstrup et al. 1989; Heikkinen et al. 1997; Hjalt and Murray 2000). (g) Plod-1 ESTs have been isolated from rabbit corneal endothelial cells (Fujimaki et al. 1999) and strong Plod-like enzymatic activity can be isolated from chick embryonic corneas (Kao et al. 1983). These structures also strongly express the Pitx2 protein in the mouse (Hjalt and Murray 2000). We were also able to show coexpression of Pitx2, Plod-1, and Plod-2 mRNA in mouse E13.5 eye by RT-PCR. It is also interesting to point out that Pitx2 is expressed in mouse aorta smooth muscle and some EDVI patients have aortic defects (Tsai and Grajewski 1994; Cunningham et al. 1998; Mammi et al. 1998). Rieger and ED syndromes normally have different modes of inheritance, autosomal dominant and recessive, respectively. However, it is still unclear exactly what the link is between the pathologies of each syndrome.
Our finding that PITX2 regulates PLOD-1 differently in different cellular backgrounds is indicative of the dependence of cofactors for correct function of a homeobox gene. The most appealing model for in vivo specificity of homeobox genes is probably the binding site selection model, in which cofactors define appropriate DNA binding site and later fine-tune expression levels (Mann and Chan 1996; Mann and Affolter 1998). This model has recently been very convincingly supported for Fushi tarazu, which also can either activate or repress its cognate target genes depending on cell type (Nasiadka et al. 2000). Furthermore, the estimated amount of available Fushi tarazu protein per cell is several orders of magnitude smaller than the theoretically available cognate DNA binding sites (Nasiadka et al. 2000). The support for the binding site selection model also lends encouragement to methods such as chromatin precipitation.
Some mouse tissues express Plod-1 and Plod-2 in the absence of Pitx2 (adult spleen and E7 whole embryo). It may be that another Pitx family member regulates the Plod genes in these tissues. Perhaps more likely is that Pitx2 serves as a modifier of gene expression, as is known to be the case in the regulation of prolactin by PIT-1 and PITX2 (Simmons et al. 1990; Szeto et al. 1996; Ryan and Rosenfeld 1997; Amendt et al. 1998). Either protein, by itself, accomplishes only modest transactivation of the prolactin promoter, but together a dramatic synergistic effect on gene expression is seen (Simmons et al. 1990; Szeto et al. 1996; Ryan and Rosenfeld 1997; Amendt et al. 1998). It will be interesting and important to find the cognate cofactors of Pitx2/PITX2 in the regulation of the Plod-1 and 2/PLOD-1 and 2 genes. Our discovery validates the chromatin precipitation method as a viable means of finding additional target genes of PITX2.
| Acknowledgments |
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Submitted: 25 August 2000
Revised: 5 December 2000
Accepted: 19 December 2000
Abbreviations used in this paper: BAC, bacterial artificial chromosome; CMV, cytomegalovirus; EDVI, Ehlers-Danlos syndrome type VI; EMSA, electrophoretic mobility shift assay; PLOD, procollagen lysyl hydroxylase; RT, reverse transcription; TK, thymidine kinase.
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