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Mechanism of transport of IFT particles in C. elegans cilia by the concerted action of kinesin-II and OSM-3 motors
Correspondence to Jonathan M. Scholey: jmscholey{at}ucdavis.edu
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The assembly and function of cilia on Caenorhabditis elegans neurons depends on the action of two kinesin-2 motors, heterotrimeric kinesin-II and homodimeric OSM-3kinesin, which cooperate to move the same intraflagellar transport (IFT) particles along microtubule (MT) doublets. Using competitive in vitro MT gliding assays, we show that purified kinesin-II and OSM-3 cooperate to generate movement similar to that seen along the cilium in the absence of any additional regulatory factors. Quantitative modeling suggests that this could reflect an alternating action mechanism, in which the motors take turns to move along MTs, or a mechanical competition, in which the motors function in a concerted fashion to move along MTs with the slow motor exerting drag on the fast motor and vice versa. In vivo transport assays performed in Bardet-Biedl syndrome (BBS) protein and IFT motor mutants favor a mechanical competition model for motor coordination in which the IFT motors exert a BBS proteindependent tension on IFT particles, which controls the IFT pathway that builds the cilium foundation.
Abbreviations used in this paper: BBS, Bardet-Biedl syndrome; IFT, intraflagellar transport; MT, microtubule.
| Introduction |
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One ciliopathy that may reflect defects in IFT is Bardet-Biedl syndrome (BBS), a genetically heterogeneous disorder characterized by a pleiotropic phenotype that encompasses truncal obesity, pigmentary retinopathy, polydactyly, renal malformations, learning disabilities, hypogenitalism, and anomisa (Beales, 2005). Mutations in 11 BBS genes are thought to cause defects in basal bodies or cilia, which may be a significant factor underlying this disease (Ansley et al., 2003; Blacque et al., 2004; Badano et al., 2006). In Caenorhabditis elegans, BBS proteins control the IFT motors that build cilia on sensory neurons, and, consequently, C. elegans sensory cilia represent an appealing model to address mechanisms of IFT and the roles of BBS proteins in cilium biogenesis and disease (Ou et al., 2005).
C. elegans amphid channel ciliary axonemes are made up of two domains: an initial segment (called the middle segment) containing 4-µmlong MT doublets extending from the 1-µmlong transition zone (a modified basal body that is also called the proximal segment) that together form the cilium foundation and a distal segment comprising 2.5-µmlong MT singlets (Perkins et al., 1986). We have previously shown that the IFT particles assembling these sensory cilia are moved by the coordinate action of two anterograde IFT motors called kinesin-II and OSM-3, which are both members of the kinesin-2 family (Cole et al., 1993; Shakir et al., 1993; Lawrence et al., 2004; Snow et al., 2004). These motors function redundantly to move the same IFT particles along the initial segment and build the cilium foundation, with either motor but not both being dispensable for this function (Snow et al., 2004; Evans et al., 2006). Then, OSM-3 alone extends singlet MTs on the distal ends of the cilium core in a process involving OSM-3 movement along these distal singlets (Perkins et al., 1986; Snow et al., 2004; Evans et al., 2006).
In this study, we focus on the question of how kinesin-II and OSM-3 are functionally coordinated to move the same IFT particle along the initial segment of amphid channel cilia. The rates of IFT seen in osm-3, klp-11, and kap-1 mutants suggest that kinesin-II alone moves along MTs at 0.5 µm/s and OSM-3 alone moves at 1.3 µm/s. This also suggests that the intermediate rate of transport seen in the initial segment of wild-type cilia (0.7 µm/s) results from the action of both motors (Snow et al., 2004; Ou et al., 2005), but the rates of MT motility predicted for the purified motors have not been tested using in vitro motility assays.
A related question is how BBS proteins contribute to the functional coordination of kinesin-2 motors. In C. elegans, BBS-1, -2, -3, -5, -7, and -8 were shown to be ciliary proteins (Blacque et al., 2004), and, of these, the loss of BBS-7 and -8 function in mutant animals leads to the loss of ciliary distal segments and sensory defects (Blacque et al., 2004). Using in vivo transport assays, we observed that in wild-type animals, IFT particle subcomplexes IFT-A and -B move together along the initial segment with kinesin-II and OSM-3 at a single rate of 0.7 µm/s. However, in bbs-7/-8 mutants, kinesin-II and IFT-A move together at 0.5 µm/s, but OSM-3kinesin and IFT-B move as a distinct complex at 1.3 µm/s. This suggested that BBS-7/-8 proteins coordinate IFT by holding subcomplexes IFT-A and -B together and stabilizing the integrity of the IFT particles (Ou et al., 2005). This offers a unique system for probing the mechanism by which BBS proteins contribute to kinesin-II and OSM-3 motor coordination.
The power of C. elegans as a system for addressing these questions would be enhanced if in vivo time-lapse microscopy assays of IFT (Orozco et al., 1999) could be complemented by in vitro motility assays (Vale et al., 1985), but this has not been performed because of the low abundance of native kinesin-2 motors (Signor et al., 1999). Here, we have initiated such in vitro assays using purified recombinant C. elegans kinesin-II and OSM-3.
In this study, we combine both in vivo and in vitro motility assays of kinesin-II and OSM-3 to determine (1) whether the cooperative motility observed in cilia is an intrinsic property of the motors alone or whether it depends on additional ciliary factors; (2) what the mechanism is by which the two IFT kinesins cooperate to move IFT particles to redundantly assemble the cilium foundation and whether motor cooperation contributes to the dissociation of the IFT particles in the bbs mutants; and (3) whether we can develop quantitative models for motor coordination that account for the in vivo and in vitro velocities of the motors. The results illuminate the mechanism by which the two same-polarity IFT motors cooperate to move an IFT particle along a cilium.
| Results |
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Recombinant OSM-3 is purified in an active homodimeric state, but it displays autoinhibition and drives a low MT gliding velocity (0.3 µm/s) when assayed on antibody-coated surfaces, and it can be activated by the mutagenesis of glycine residue 444 to glutamate (Snow et al., 2004; Imanishi et al., 2006). To control for this potential complication, we compared MT gliding driven by wild-type OSM-3 on antibody-coated surfaces or directly coated onto the coverslip with that of the OSM-3G444E mutant protein in different Pipes concentrations (Fig. 1 E) and observed that directly adsorbed OSM-3 and OSM-3G444E both supported MT gliding at similar rates of 1.1 and 0.97 µm/s, respectively. We conclude that direct adsorption onto the coverslip, as in our standard gliding assays, activates autoinhibited OSM-3 to the same extent as mutagenesis, and, consequently, the assays of both the wild-type OSM-3 and OSM-3G444E discussed in the following section refer to the active state.
Purified kinesin-II and OSM-3kinesin interact to produce intermediate rates of motility in MT gliding assays
Based on the aforementioned results, we analyzed the rate of MT-based motility driven by mixtures of varying molar ratios of pure kinesin-II and OSM-3 in the presence of 45 mM Pipes for wild-type OSM-3 and 25 mM Pipes for OSM-3G444E (Fig. 2
and Table II).
Under these optimized conditions, kinesin-II alone moved at
0.5 µm/s, whereas OSM-3 alone (wild type or the G444E mutant) moved at
1.1 µm/s (Fig. 1 E, Fig. 2, Table II, and Video 1; available at http://www.jcb.org/cgi/content/full/jcb.200606003/DC1), which is very close to the rates of transport driven by kinesin-II (0.5 µm/s) and OSM-3 (1.3 µm/s) in vivo (Snow et al., 2004; Ou et al., 2005). Moreover, mixtures of the two motors displayed intermediate rates of motility, with the rate varying in a nonlinear fashion with the molar ratio and replicating the in vivo rate of 0.7 µm/s at a mole fraction of OSM-3 between 0.6 and 0.8 (Fig. 2, Table II, and Video 1). This suggests that intermediate velocities of motility, like those observed along the initial segments of cilia, can be generated by simple functional interactions between kinesin-II and OSM-3 without any requirement for additional ciliary factors such as regulators of motility, the presence of IFT particles bound to the motors as cargo, an overlying ciliary membrane, or cilia-specific axonemal MT doublets to serve as tracks for the motors.
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However, the alternating action and mechanical competition models do make distinct predictions concerning the transport of IFT particles in double mutants lacking BBS proteins and either kinesin-II or OSM-3 (bbs;klp-11, bbs;kap-1, or bbs;osm-3 mutants). Let us consider why IFT particle subcomplexes A and B apparently move together along the initial segment of the cilium at 0.7 µm/s in wild types, whereas in bbs mutants, IFT-A is apparently moved by kinesin-II at 0.5 µm/s, and IFT-B is moved at
1.11.3 µm/s by OSM-3 (Ou et al., 2005). We assume that the BBS proteins stabilize intact IFT particles, which therefore dissociate into IFT-A and -B in the bbs loss of function mutants. Although this dissociation could be passive, we reasoned that it might instead be an active process caused by stresses imposed on the IFT particles by the concerted action of kinesin-II and OSM-3 motors moving the IFT particles together if the slow motor exerts drag on the fast motor and vice versa, as in the mechanical competition model (supplemental material). Such stresses could not be developed by motors acting sequentially, as in the alternating action model, because only one type of motor will be moving the particle at any one time (supplemental material). Furthermore, if the stresses that dissociate IFT particles in bbs single mutants require mechanical competition between kinesin-II and OSM-3, the loss of either motor together with BBS protein function, as in bbs;kinesin-2 double mutants, should prevent IFT particle dissociation. Based on these arguments, the alternating action model predicts that in double bbs;kinesin-2 mutants, IFT particles will dissociate passively into IFT-A and -B, only one of which is moved along the cilium (Fig. 3 A).
On the other hand, the mechanical competition model predicts that the IFT particles should remain intact in the absence of the tension exerted on IFT particles by the concerted action of the competing motors (Fig. 3 A).
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These results support the predictions of the mechanical competition model (Fig. 3 B). Accordingly, we propose that in wild-type C. elegans, IFT particles are moved along sensory cilia by kinesin-II and OSM-3kinesin acting together, with the slower moving kinesin-II exerting drag on the faster moving OSM-3, whereas the faster moving OSM-3 tends to pull the slower moving kinesin-II along (Fig. 3 B). This produces a mechanical competition that translates into tension across the IFT particles, leading to their dissociation in the absence of the BBS proteins (Fig. 3 B, bbs mutant). Thus, the BBS-7 and -8 proteins antagonize this tension force and maintain the integrity of the IFT particles by stabilizing the association of IFT-A with IFT-B (Fig. 3 B, wild type [WT]). Conversely, in bbs-7 or -8 single mutants, this stabilization is lost, and the motor-dependent stresses dissociate subcomplexes A and B, which are moved separately by kinesin-II or OSM-3 (Fig. 3 B). In the bbs;kinesin-2 double mutants, however, the remaining kinesin-2 motor lacks its antagonistic partner, so the stresses required to dissociate IFT-A from IFT-B are absent. Consequently, the IFT particles are moved intact along the cilium by kinesin-II or OSM-3kinesin alone (Fig. 3 B, bbs;klp-11 and bbs;osm-3).
| Discussion |
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The availability of purified C. elegans kinesin-II and OSM-3 allowed us to assess their role in IFT by comparing in vivo and in vitro motility assays. The rates of MT gliding driven by kinesin-II and OSM-3 (0.40.5 and 1.1 µm/s) are similar to the rates of anterograde movement of GFP::kinesin-II and GFP::OSM-3 alone along C. elegans sensory cilia (0.5 and 1.3 µm/s), and the intermediate rate of 0.7 µm/s seen along the initial segment of the cilium can be recapitulated in gliding assays using mixtures of kinesin-II and OSM-3 (Orozco et al., 1999; Snow et al., 2004; Ou et al., 2005). This is striking given the different conditions under which the motors drive MT gliding over glass coverslips versus driving IFT particle transport along cilia, where different ATP concentrations, different MT tracks, and the presence of IFT particles or other regulatory cofactors could influence motility. Both quantitative modeling and in vivo IFT assays using bbs;IFT motor double mutants are concordant with the intermediate rate being caused by simple mechanical competition between kinesin-II and OSM-3, which further suggests that motor coordination does not require sophisticated regulatory mechanisms to turn the motors on and off.
Role of BBS proteins in IFT particle stability and motor coordination
In this model, BBS proteins coordinate the motors simply by maintaining the association of kinesin-IIIFT-A with OSM-3IFT-B, which otherwise dissociate because of tension exerted by the two motors (e.g., in bbs mutants). In gliding assays, BBS proteins are not required because the coverslip forms a physical connection between adjacent kinesin-II and OSM-3 proteins. Our model assumes that IFT subcomplexes A and B normally interact to form a single IFT particle complex that is moved along the wild-type cilium by both kinesin-II and OSM-3 (which may move along the MT A and B subfibers, respectively; Ou et al., 2005). However, although IFT particles isolated from Chlamydomonas reinhardtii flagella (which probably lack BBS proteins) sediment as a 16-S complex, they can also be separated by varying the solution conditions, raising the possibility that IFT-A and -B usually exist as separate complexes in vivo (Cole et al., 1998; Qin et al., 2004). For example, our previous data could be explained if in wild types, separate complexes of kinesin-IIOSM-3IFT-A and kinesin-IIOSM-3IFT-B move at the same rate along the initial segment of the cilium, with BBS proteins being required to dock OSM-3 onto the kinesin-IIIFT-B complex and kinesin-II onto the OSM-3kinesin-II complex (Ou et al., 2005). However, this predicts that in bbs;kinesin-II and bbs;osm-3 double mutants, IFT-A and -B, respectively, would not move along the cilium at all, which is inconsistent with our IFT assays. More work is required to firmly establish that IFT-A and -B normally interact to form a single transport complex in vivo.
Although BBS proteins appear to be required for the stabilization of IFT particles in systems that use both kinesin-II and OSM-3 for ciliogenesis, in organisms where kinesin-II acts alone (for example, C. reinhardtii), the two-motordependent mechanical competition is lacking, so IFT particles should remain intact in bbs mutants, and BBS proteins may not be needed. Indeed, BBS-7/-8 proteins are absent in the C. reinhardtii flagellome (Pazour et al., 2005), although it is possible that they, along with OSM-3, enter the flagellum and elongate distal singlets during mating (Mesland et al., 1980). In vertebrates, the OSM-3 homologue KIF17 is required to target cyclic nucleotide-gated channels to the cilium (Jenkins et al., 2006). Moreover, prominent distal singlets of the type found in C. elegans sensory cilia occur in various organisms (e.g., human [Moran et al., 1982] and frog olfactory cilia [Reese, 1965]), and cyclic nucleotide-gated channels cluster over a region of the distal segments in the latter cilia (Flannery et al., 2006). Interestingly, BBS knockout mice (BBS-1, -2, and -4) specifically lose the distal segments of their olfactory cilia, which results in anosmia (Kulaga et al., 2004; Mykytyn et al., 2004; Nishimura et al., 2004). Thus, BBS proteins may contribute to IFT specifically in cilia containing distal segments, where two anterograde IFT motors are used. The BBS proteindependent mechanical competition between IFT motors, which was uncovered in C. elegans sensory neurons, may be relevant to the assembly of similar two-domain cilia in some vertebrates in which defects in this process may underlie BBS.
Relevance to other systems of motor coordination
The antagonistic competition between opposite polarity mitotic MT motors has been discussed extensively (Sharp et al., 2000), and precedents also exist for functional interaction between same-polarity motors. In muscles, for example, slower cycling cross-bridges can exert drag on faster cycling bridges and, thereby, slow down the maximal velocity of the shortening of the muscle (Warshaw et al., 1990). It has also been shown that a motor can be accelerated by a force applied in the direction of MT gliding driven by that motor (Coppin et al., 1997). Moreover, the biophysical plausibility of our proposed mechanism is supported by experiments in which plus enddirected kinesin motors with different speeds were shown to interact to produce intermediate speeds in motility assays, including kinesin-1 and -5 (Crevel et al., 2004) and mixed Kif3A and Kif3B homodimers (Zhang and Hancock, 2004). The striking studies of Zhang and Hancock (2004) illuminate how the distinct Kif3A and Kif3B motor domains can cooperate within the processive kinesin-II holoenzyme, but the competition between kinesin-1 versus kinesin-5 and Kif3A versus Kif3B homodimers are unlikely to reflect true in vivo interactions. To our knowledge, our study is the first to uncover competitive motility between distinct, same-polarity MT-based intracellular transport motor holoenzymes that are known to cooperate in vivo.
This system differs from the controlled coordination that exists between kinesin-II and cytoplasmic dynein on melanosomes (Rogers et al., 1997) and other cargoes (Kural et al., 2005), in which the simultaneous activation and inhibition of the anterograde and retrograde motors (and vice versa) facilitates alternating runs in the anterograde and retrograde direction (Mallik and Gross, 2004). The distinct mechanical competition proposed here for same-polarity IFT motors may represent yet another general way in which motors are coordinated and controlled to produce coherent networks of intracellular transport within eukaryotic cells.
Model predictions
The quantitative mechanical competition model makes testable predictions. For example, the unloaded velocities of kinesin-II and OSM-3,
and
, are known, but the ratio of their stall forces,
, is an unknown free parameter (supplemental material). By adjusting
and comparing the resulting curve to the gliding assay data, we find the best fit when the ratio of OSM-3 to kinesin-II stall forces is
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= 0.98), (2) the unloaded velocities of the two motors (
and
), and (3) the velocity of IFT particle transport driven by the concerted action of the two motors (vcargo = 0.72 µm/s, yielding C = 1.25). This leads to the prediction that in vivo, the mole fraction of OSM-3 is
0.45, reflecting an approximately equimolar ratio of the two motors on the IFT particles within the initial segment of the cilium. The analysis of isolated motorIFT particle complexes may allow us to test this prediction. Overall, this work illuminates how two anterograde IFT motors cooperate to move IFT particles along the initial segment of the axoneme at a rate that is intermediate between the free-sliding rate of each motor alone to build the cilium foundation on dendritic endings of C. elegans sensory neurons.
| Materials and methods |
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Cell pellets from 400 ml of culture were suspended in 80 ml of ice-cold lysis buffer containing 50 mM Pipes, pH 7.0, 300 mM NaCl, 1 mM MgCl2, 1 mM 2-mercaptoethanol, and EDTA-free protease inhibitor mixture (Roche) and passed twice through a French press at 1,000 pounds per square inch. The cell lysate was centrifuged for 30 min at 1,5000 g and 4°C. The supernatant was purified using Talon affinity beads (BD Biosciences) according to the manufacturer's instructions. The Talon-purified protein was dialyzed against gel filtration column buffer containing 80 mM Pipes, pH 6.9, 200 mM NaCl, 1 mM MgCl2, 1 mM EGTA, 1 mM DTT, and 0.1 mM ATP. The kinesin-II complex was further purified on a column (Sephacryl S-300HR; GE Healthcare) in gel filtration buffer and concentrated by ultrafiltration with Centriprep 30K (Amicon). This simple procedure of Talon column affinity followed by Sephacryl S-300 gel filtration chromatography routinely yielded 2 mg of highly purified kinesin-II per 400 ml of starting material (Fig. 1 A and Fig. S1 A). We estimate that we would need to start with 4,000 liters of mixed stage worm culture (i.e., 10,000 times more starting material) to purify kinesin-II in comparable amounts (Signor et al., 1999).
Hydrodynamic analysis
Sucrose density gradient centrifugation and gel filtration chromatography were performed as described previously (Wedaman et al., 1996). The molecular weight of the kinesin-II complex was calculated using the Siegel and Monty equation (Siegel and Monty, 1966; Cole et al., 1992; Wedaman et al., 1996).
Motility assays
MT motility assays were performed as described previously at 21°C (Cohn et al., 1989). The velocities of 1060 MTs were measured for each data point.
Fluorescence microscopy
IFT was assayed as described previously (Snow et al., 2004; Ou et al., 2005). The GFP transgenic worms were anesthetized with 10 mM levamisole, mounted on agar pads, and maintained at 21°C. We collected images with a microscope (IX70; Olympus) equipped with a 100x NA 1.35 objective and a spinning disc confocal head (UltraVIEW; PerkinElmer) with excitation by 488-argon ion lasers at 0.3 s/frame for 23 min. All images were acquired using cooled charge-coupled device cameras (ORCA-ER; Hamamatsu), and kymographs and videos were created using MetaMorph software (Universal Imaging Corp.).
Creation and maintenance of bbs and motor mutant animals
Transgenic animals expressing che-11::gfp, che-2::gfp, and osm-6::gfp were crossed with bbs-7/osm-12(n1606), bbs-8(nx77) and klp-11(tm324), or osm-3(p802) to create double mutants, and their genotypes were confirmed by their dye-filling phenotype and/or PCR.
Online supplemental material
Supplemental material provides data (1) supporting purified C. elegans kinesin-II as a monodisperse heterotrimeric complex whose motility conforms to Michaelis-Menten kinetics and (2) describing quantitative models for the functional coordination of the two anterograde IFT kinesins. Fig. S1 shows the purification and hydrodynamic analysis of the heterotrimeric kinesin-II from Sf9 cell extracts. Fig. S2 shows Michaelis-Menten analysis of the motility activity of purified C. elegans kinesin-II in the presence and absence of nucleotide substrates and inhibitors. Fig. S3 shows the alternating action and mechanical competition models that explain the comovement of kinesin-II and OSM-3kinesin along sensory cilia. Fig. S4 shows motility assay data obtained using kinesin-II or OSM-3 alone and mixtures of the two motors together with the gliding velocity versus mole fraction relationship. Video 1 shows in vitro assays of MT gliding induced by purified kinesin-II, purified OSM-3, and a mixture of the two motors. Videos 25 show in vivo transport assays of the movement of IFT particle proteins along sensory cilia of double mutant strains bbs-7(n1606);klp-11(tm324) and bbs-7(n1606);osm-3(p802). Online supplemental material is available at http://www.jcb.org/cgi/content/full/jcb.200606003/DC1.
| Acknowledgments |
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This work was supported by grants from the National Institutes of Health (to J.M. Scholey and R.D. Vale) and the Canadian Institutes of Health Research (to M.R. Leroux).
Submitted: 1 June 2006
Accepted: 25 August 2006
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