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Ref(2)P, the Drosophila melanogaster homologue of mammalian p62, is required for the formation of protein aggregates in adult brain
Correspondence to Harald Stenmark: stenmark{at}ulrik.uio.no; or Andreas Brech: Andreas.Brech{at}rr-research.no
p62 has been proposed to mark ubiquitinated protein bodies for autophagic degradation. We report that the Drosophila melanogaster p62 orthologue, Ref(2)P, is a regulator of protein aggregation in the adult brain. We demonstrate that Ref(2)P localizes to age-induced protein aggregates as well as to aggregates caused by reduced autophagic or proteasomal activity. A similar localization to protein aggregates is also observed in D. melanogaster models of human neurodegenerative diseases. Although atg8a autophagy mutant flies show accumulation of ubiquitin- and Ref(2)P-positive protein aggregates, this is abrogated in atg8a/ref(2)P double mutants. Both the multimerization and ubiquitin binding domains of Ref(2)P are required for aggregate formation in vivo. Our findings reveal a major role for Ref(2)P in the formation of ubiquitin-positive protein aggregates both under physiological conditions and when normal protein turnover is inhibited.
| Introduction |
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Ubiquitin-containing protein aggregates are among the most characteristic features of human neurodegenerative diseases, and mouse models have indicated that autophagy is crucial to prevent their accumulation (for review see Rubinsztein, 2006). The mammalian p62 protein is known to closely associate with neural aggregates and inclusion bodies found in the most common neural degenerative disorders (Zatloukal et al., 2002) and has been shown to bind the autophagic protein Atg8/LC3, but its physiological role in aggregate formation and/or clearance has not been elucidated (Bjorkoy et al., 2005; Pankiv et al., 2007).
In this paper, we present that the D. melanogaster p62 homologue Ref(2)P is a major component of protein aggregates formed during normal aging in D. melanogaster adult brain. Ref(2)P is also a major component of protein aggregates in flies that are defective in autophagy, flies that have impaired proteasomal function, and D. melanogaster models of human neurodegenerative diseases. Importantly, both the abilities of Ref(2)P to multimerize (through its Phox and Bem1p [PB1] domain) and to bind ubiquitinated proteins (through its ubiquitin-associated [UBA] domain) are necessary functions required during the in vivo formation of protein aggregates in the adult brain.
| Results and discussion |
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Ref(2)P protein contains three domains involved in protein–protein interactions: PB1, ZZ, and UBA. The N-terminal end consists of a PB1 domain (aa 6–88) involved in multimerization. The ZZ zinc finger and the UBA domains are located between aa 121 and 165 and aa 554 and 594, respectively (Carré-Mlouka et al., 2007). To address the role of Ref(2)P in aggregate formation, we used two loss-of-function alleles of ref(2)P (Wyers et al., 1995). The ref(2)Pod2 loss-of-function allele results in a protein lacking the PB1 domain and has a molecular mass of 85 kD, compared with the 100 kD mass of the wild-type protein (Fig. 4 D). In the ref(2)Pod3 loss-of-function mutant, the protein lacks the UBA domain and has a molecular mass of 69 kD (Fig. 4 D). These two ref(2)P mutations appear unfunctional for sigma virus ability to multiply and for male fertility (homozygous males are sterile; Wyers et al., 1995). To test whether these two loss-of-function mutations affect the formation of protein aggregates in the adult brain in the absence of autophagy, we decided to test the role of the loss-of-function ref(2)P mutants in an atg8a mutant genetic background. Importantly, young double mutant flies for atg8aKG07569 and ref(2)Pod2 or atg8aKG07569 and ref(2)Pod3 did not exhibit protein aggregates in the cell cortex of the adult brain compared with the single atg8aKG07569 mutant flies (Fig. 3, E–F). Moreover, ubiquitin exhibited cytoplasmic staining (Fig. 3, E–F), and fractionation and Western blot analysis of double mutant brains showed that their insoluble ubiquitinated protein profile was diminished compared with that of control flies (atg8aKG07569/Y; ref(2)Pod2orod3/CyO; Fig. 4 D). This is consistent with a paper published when the present manuscript was under review, reporting that loss of p62 suppresses the formation of protein aggregates in autophagy-deficient neurons and hepatocytes in mice (Komatsu et al., 2007). Collectively, these data show that a functional Ref(2)P protein is necessary for the formation of aggregates of ubiquitinated proteins in vivo in atg8a mutant genetic background. Furthermore, it suggests that both the PB1 and the UBA domain of D. melanogaster Ref(2)P are required for the formation of protein aggregates in vivo.
p62 is known to associate with protein aggregates found in the most common neurodegenerative disorders (Zatloukal et al., 2002). To test the functional conservation of Ref(2)P during the formation of neural aggregates, we examined known D. melanogaster models of human neurodegenerative diseases (Marsh and Thompson, 2006). The mutant human tau protein (Fulga et al., 2007) was expressed throughout the D. melanogaster central nervous system using the pan-neural elav-Gal4 driver (Fig. S1 D). Immunofluorescence microscopy analysis of whole mount brains revealed the presence of Ref(2)P-positive structures in the adult brain that colocalized with tau (Fig. 4 G). These data demonstrate that Ref(2)P can also be a component of protein aggregates in D. melanogaster models of human neurodegenerative diseases.
The formation of protein aggregates is a major feature in many neurodegenerative diseases. The mechanisms of their formation are currently under extensive research. In this paper, we used D. melanogaster adult brain as a model tissue to study the formation of protein aggregates and show that Ref(2)P, the D. melanogaster homologue of mammalian p62, is a major component of protein aggregates in the D. melanogaster adult brain. These aggregates are formed during normal aging, when it is known that proteasomal and autophagic activity diminishes (Vernace et al., 2007; Simonsen et al., 2008). This decrease likely contributes to the reduced mobility and subsequent death of old flies. Ref(2)P is also a major component of protein aggregates in flies that are defective in autophagy, flies that have impaired proteasomal function, and D. melanogaster models of human neurodegenerative diseases. Importantly, both the PB1 and the UBA domains of Ref(2)P are necessary for the formation of protein aggregates, suggesting that both the abilities of Ref(2)P to multimerize and bind ubiquitinated proteins are necessary functions required during the in vivo formation of protein aggregates.
| Materials and methods |
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3D FRT80 line was a gift from T.P. Neufeld (University of Minnesota, Minneapolis, MN). The ref(2)Pod2 and ref(2)Pod3 flies are described in Wyers et al., (1995). For the induction of clones in the adult brain, larvae were heat shocked on days 4 and 5 (L2 and L3 of larvae development) for 1 h and 30 min at 37°C in a circulating water bath. The UAS CD8 GFP, hsflp; tubGal4/CyO; tubGal80 FRT80 line used for clonal analysis was a gift from T. Schupbach (Princeton University, Princeton, NJ).
Immunofluorescence labeling and confocal microscopy
D. melanogaster adult brains were carefully dissected in PBS and immediately fixed in PBS containing 4% formaldehyde for 1 h. After fixation, the samples were incubated in blocking solution (PBS containing 0.3% Triton X-100 and 0.3% BSA) for 30 min. The brains were then incubated overnight at 4°C in blocking solution containing the primary antibodies. The primary antibodies used in the present study were the following: mouse anti–mono- and polyubiquitinated proteins (Clone FK2; BIOMOL International, L.P.) used at a concentration of 1:500; rabbit polyclonal antibody against D. melanogaster Ref(2)P protein (Wyers et al., 1995) used at a dilution of 1:1,000; and mouse anti-tau1 (Millipore) used at a dilution of 1:1,000. After incubation with the respective primary antibody, brains were washed four times with blocking solution. The secondary antibodies, conjugated with either Cy2 or 3, were purchased from Jackson Immunoresearch Laboratories. Draq5 (Biostatus Limited) was used to stain DNA at a dilution of 1:1,000. Finally, the brains were mounted in antifading mounting medium (Prolong Antifade; Invitrogen) and observed under a confocal laser scanning microscope (LSM 510 META; Carl Zeiss, Inc.) equipped with NeoFluar 16x/0.50 NA, 63x/1.4 NA, and 100x/1.45 NA oil immersion objectives at 20°C. Image processing and analysis were done with LSM 510 software (version 3.2; Carl Zeiss, Inc.), ImageJ (National Institutes of Health), and Photoshop CS2 (Adobe).
Western blot analysis
Biochemical analysis of D. melanogaster adult heads was performed as previously described (Finley et al., 2003, Fulga et al., 2007; Simonsen et al., 2008). The anti-GABARAP antibody used for detecting Atg8a was a gift from T. Ueno and E. Kominami (Juntendo University, Tokyo, Japan).
Electron microscopy
For cryoimmunocytochemistry, the brains were fixed in 4% formaldehyde and 0.1% glutaraldehyde in 0.1 M Sørensen phosphate buffer, pH 7.4. The samples were washed in PBS, infiltrated with 2.3 M sucrose, mounted on sample stubs, and frozen in liquid nitrogen. Sectioning was done on a cryomicrotome (FCS; Leica). Sections were collected with a 1:1 mixture of 2% methylcellulose and 2.3 M sucrose, transferred to formvar/carbon-coated grids, and labeled with the primary antibodies described in Immunofluorescence labeling and confocal microscopy, followed by a secondary rabbit anti–mouse bridging antibody (Dako) and protein A–gold conjugate. Specimens were observed in a JEM-1230 (JEOL) operating at 80 KV. Micrographs were recorded with a digital camera (Morada; Olympus) using ITEM software (Olympus).
Online supplemental material
Fig. S1 shows accumulation of protein deposits in the brains of old flies, proteasome mutant flies, and tau-expressing flies. Online supplemental material is available at http://www.jcb.org/cgi/content/full/jcb.200711108/DC1.
| Acknowledgments |
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This work was supported by grants from the Hartmann Family foundation (H. Stenmark), the Functional Genomics Program of the Norwegian Research Council (I.P. Nezis, A. Simonsen, T.E. Rusten, H. Stenmark and A. Brech), and the Norwegian Cancer Society (A. Simonsen).
Submitted: 21 November 2007
Accepted: 21 February 2008
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