Table 3. Basal cells: Identified HOMER motifs and corresponding transcription factor names
HOMER motifNameh-MeATAC-seq
p63(p53)/Keratinocyte-p63-ChIP-SeqTP63YesYes
p53(p53)/Saos-p53-ChIP-SeqTP53YesYes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-SeqNF1-halfsiteYesNo
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)TEAD4YesNo
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-SeqPAX8YesNo
Tcf4(HMG)/Hct116-Tcf4-ChIP-SeqTCF4YesNo
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)AR-halfsiteYesNo
X-box(HTH)/NPC-H3K4me1-ChIP-SeqX-BOX(HTH)YesNo
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)TCF7L2YesNo
NF1(CTF)/LNCAP-NF1-ChIP-SeqNFIBYesNo
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)TFAP4YesNo
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)RFX5YesNo
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)EGR2YesYes
NFAT(RHD)/Jurkat-NFATC1-ChIP-SeqNFATC1YesNo
EGR(Zf)/K562-EGR1-ChIP-SeqEGR1YesYes
TEAD(TEA)/Fibroblast-PU.1-ChIP-SeqTEADYesNo
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-SeqATOH1YesNo
NFkB-p65(RHD)/GM12787-p65-ChIP-SeqRELAYesNo
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-SeqPPARGYesNo
Tcf3(HMG)/mES-Tcf3-ChIP-SeqTCF3YesNo
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)FOSNoYes
Jun-AP1(bZIP)/K562-cJun-ChIP-SeqJUNNoYes