Table 2. Luminal cells: Identified HOMER motifs and corresponding transcription factor names
HOMER motifNameh-MeATAC-seq
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-SeqFOXA1YesYes
ETS1(ETS)/Jurkat-ETS1-ChIP-SeqETS1YesNo
Jun-AP1(bZIP)/K562-cJun-ChIP-SeqJUNYesNo
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)FOSYesNo
Ets1-distal(ETS)/CD4+-PolII-ChIP-SeqETS1-distalYesNo
ERG(ETS)/VCaP-ERG-ChIP-SeqERGYesNo
Foxa2(Forkhead)/Liver-Foxa2-ChIP-SeqFOXA2YesYes
NF1(CTF)/LNCAP-NF1-ChIP-SeqNFIBYesYes
Foxo1(Forkhead)/RAW-Foxo1-ChIP-SeqFOXO1YesNo
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)ELF5YesYes
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)NF1:FOXA1YesYes
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)SPI1-IRFYesNo
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)SPI1YesYes
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)BACH2YesNo
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)FOXP1YesYes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-SeqNF1-halfsiteYesNo
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)FOX:EBOXYesNo
AP2gamma(AP2)/MCF7-TFAP2c-ChIP-SeqTFAP2CYesNo
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)BACH1YesNo
MyoD(HLH)/Myotube-MyoD-ChIP-SeqMYOD1YesNo
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)MYBYesNo
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)NFE2L2YesNo
Pbx3(Homeobox)/GM12878-PBX3-ChIP-SeqPBX3YesNo
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-SeqTFAP2AYesNo
TR4(NR/DR1)/Hela-TR4-ChIP-SeqNR2C2YesNo
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)GATA3YesYes