Table II.

Candidate genes

GeneFORENGeneFORENGeneFORENGeneFORENGeneFOREN
FAA2p131CMK1o6YGR243Wu3CAT8o1SMF2o1
POX1p426IPT1p6YGR250Co13CDA1o1TIF4631o1
ECI1p125MDH2p16YLR312Cu3CDC5o1WHI2o1
FOX2p125PEX5p6YMR041Cu3CYT1o11YAL053Wu1
TES1p125PEX6p16ACS2o12CYT2o1YDL085Wo1
PXA2p124RPN4o6AFG3o2DNM1o1YDL219Wo1
SPS18o122SFC1o6ECM30o2ECM4o1YDR205Wo1
IDP3p320SNF11o6GPX1o2ENB1o1YDR214Wu1
PIP2p19ERG6p5GUT2o2ERF2o1YDR223Wu1
POT1p218FUN34u5HMG1p2FRE1o1YDR247Wu1
YLR287Cu17PEX14p5LYS9o2FSP2o1YGL101Wu1
DCI1p15YIL060WuN/D5PDR15o2GAL11o1YHR054Cu1
ECM13o14YPL112Cu15RIB1o2GDH3o1YHR080Cu1
SPS19p114ARO9o4RIM11o2GDS1o1YHR132W-AuN/D1
YKR012CuN/D14CIT2p4RNC1o2GLG1o1YHR202Wu1
CTA1p113EHT1o4YAT1p2HIR1o1YIL064Wu1
ICL1p13FAT2p4YCR013CuN/D2INO1p1YIL163Cu1
PEX15p113LYS1p4YDR036Cu2KNS1u1YJL112Wo1
PEX18p113PEP1o4YER067WuN/D2LSM8o1YJL218Wu1
PSP1o13PEX13p24YFR011Cu2LYS14o1YJR120Wo1
SPC25o113PXA1p14YGL196Wu2MCM1o1YKL054Cu1
YHR140Wu113RKI1o4YGR035Cu12MRF1o1YKR046Cu1
YMR018Wu13SAP155o4YIL057Cu2MRS6o1YKR064Wu1
PEX1p112SDS23o4YJL217Wu2MSB1o1YLR294CuN/D1
YKR027Wu12YBR012Cu4YLR285Wu12MYO5o1YLR454Wu1
YPL113Cu12YBR047Wu4YMR210Wu2NMD3o1YMR103Cu1
YOR273Co111YDR380Wu4YNL134Cu12NPL4o1YNL140CuN/D1
MLS1p10YEL020Cp4YOR086Cu2NRP1o1YNL144Cu1
PEX11p110YHR056Co4YOR138Cu2NUP145o1YNL205CuN/D1
YAP6o10YJR098Cu4YPL099Cu2NUP192o1YNL212Wu1
YGR086Cu9YKL137Wo4YPL156Cu2OYE3p11YNL278Wu1
YJL084Cu9YKL187Cu4YPL276Wu2PBI2o1YOL027Cu11
CAT2p18YKR003Wp4YPL278Cu2PCA1o1YOL087Cu1
MDH3p18YKR067Wp4YTA12o2PDE2o1YOR186Wu1
YMR031Cu8ZTA1u4ADR1o1PDR12o11YOR240Wu11
YOR084Wu18CRC1p13AMS1o1PET9o1YPK2o1
YBL095Wu8HAP4o3ARG1o1PHO5o1YPL095Cu11
GLN3o7ICL2o3ATP14o1PHO84o1YPL110Cu11
PCL10o7LYS12o3ATP17o1PPA2o1YPL207WuN/D1
SIP2u7NOS1o3ATP3o1PTC4o1YPL229Wu1
YGR130Cu17NYV1o3ATP4o1RDI1o1YPL275Wu1
YNR020Cu7QCR7o3ATP7o1REG2o1YPR003Co1
YOR087WoN/D7SNO1o3BNS1u1RPR2o1YPR117Wu1
YPR023Co7YDL110Cu3CAF17o1SEN1o1YPS1o1
ARA1o6YFL030Wu3CAR2o1SKY1o11
  • The 224 candidate genes are listed. Column F contains functional classifications: p, genes having a role related to peroxisomes (i.e., involved in lipid, fatty acid, and sterol metabolism or encoding a protein that is either peroxisomal or a peroxin); o, genes with other cellular roles that have not been classified as “p”; u, unknown. Annotations are based on their classifications in the literature and in the Proteome database (Costanzo et al., 2000). Column ORE contains the number of OREs found upstream of each gene using ScanACE software (version 1.3) (Hughes et al., 2000a). Only elements that were <3 SDs from the motif average are reported. N/D, not determined. Column N contains the number of “hits” each gene received by all clustering methods. For a description of each “hit,” refer to the supplementary material. Two candidate genes of interest, YPL112c (renamed PEX25) and YOR084w, are underlined.